Scientia Silvae Sinicae ›› 2022, Vol. 58 ›› Issue (3): 86-96.doi: 10.11707/j.1001-7488.20220310
Previous Articles Next Articles
Feiran Jia,Zhongfu Zhou,Wenxia Zhao,Huiquan Sun,Yanxia Yao*
Received:
2021-05-16
Online:
2022-03-25
Published:
2022-06-02
Contact:
Yanxia Yao
CLC Number:
Feiran Jia,Zhongfu Zhou,Wenxia Zhao,Huiquan Sun,Yanxia Yao. Diversity of Gut Microorganisms in Natural Population of Agrilus mali (Coleoptera: Buprestidae)[J]. Scientia Silvae Sinicae, 2022, 58(3): 86-96.
Table 2
Basic information of high-throughput sequencing of fungal ITS2 and bacterial 16S rRNA in gut of A. mali with different hosts and stages"
样本编号 Sample code | 基因 Gene | 原始标签数 Number of raw tags | 有效标签数 Number of valid tags | OTU数 Number of OTUs | 不同分类阶元分类单元数目 Number of taxa of different taxonomic categories | ||||
门 Phylum | 纲 Class | 目 Order | 科 Family | 属 Genus | |||||
CA | ITS2 | 72 974 | 72 513 | 43 | 3 | 10 | 16 | 26 | 33 |
16S rRNA | 31 988 | 31 348 | 19 | 4 | 5 | 9 | 13 | 16 | |
CL | ITS2 | 61 586 | 60 313 | 79 | 5 | 16 | 27 | 43 | 51 |
16S rRNA | 50 973 | 41 074 | 894 | 36 | 87 | 200 | 305 | 453 | |
WA | ITS2 | 64 390 | 62 665 | 58 | 4 | 12 | 19 | 32 | 36 |
16S rRNA | 49 520 | 5 468 | 266 | 25 | 47 | 91 | 145 | 209 | |
WL | ITS2 | 54 762 | 53 615 | 105 | 4 | 16 | 36 | 53 | 62 |
16S rRNA | 44 547 | 38 169 | 291 | 20 | 40 | 86 | 133 | 255 |
Table 3
Diversity indices of fungi and bacteria in gut of A. mali at different hosts and stages"
类群 Groups | 样本编号 Sample code | 多样性指数 Diversity indices | ||||
Shannon | Simpson | Ace | Chao | Coverage | ||
真菌 Fungi | CA | 1.20 | 0.47 | 41.67 | 42.00 | 0.999 9 |
CL | 3.26 | 0.07 | 70.00 | 70.00 | 1.000 0 | |
WA | 3.18 | 0.09 | 98.00 | 98.00 | 1.000 0 | |
WL | 2.89 | 0.15 | 53.25 | 53.00 | 0.998 8 | |
细菌 Bacteria | CA | 0.80 | 0.49 | 37.23 | 24.25 | 0.998 7 |
CL | 3.47 | 0.16 | 894.64 | 717.56 | 0.962 5 | |
WA | 3.57 | 0.08 | 278.88 | 273.77 | 0.994 5 | |
WL | 2.46 | 0.24 | 397.08 | 373.73 | 0.980 8 |
Table 4
The proportion of COG prediction function categories in gut of A. mali with different hosts and stages"
类别 Category | 描述 Description | 样本 Sample(%) | |||
CA | CL | WA | WL | ||
M | 细胞壁/膜/膜生物发生 Cell wall/membrane/envelope biogenesis | 8.08 | 21.43 | 31.98 | 38.50 |
H | 辅酶转运与代谢 Coenzyme transport and metabolism | 6.43 | 19.99 | 40.60 | 32.97 |
A | RNA加工与修饰 RNA processing and modification | 11.54 | 27.90 | 4.91 | 55.65 |
Q | 次生代谢物生物合成、运输和分解代谢 Secondary metabolites biosynthesis, transport and catabolism | 6.62 | 20.34 | 32.38 | 40.66 |
G | 碳水化合物运输和代谢 Carbohydrate transport and metabolism | 11.41 | 19.47 | 26.22 | 42.89 |
V | 防御机制 Defense mechanisms | 6.22 | 21.68 | 36.71 | 35.39 |
T | 信号转导机制 Signal transduction mechanisms | 7.02 | 20.56 | 41.78 | 30.65 |
D | 细胞周期控制,细胞分裂,染色体分割 Cell cycle control, cell division, chromosome partitioning | 8.78 | 22.97 | 33.78 | 34.47 |
Z | 细胞骨架 Cytoskeleton | 0.07 | 16.52 | 17.65 | 65.76 |
B | 染色质结构与动力学 Chromatin structure and dynamics | 0.08 | 21.26 | 57.19 | 21.47 |
K | 转录 Transcription | 9.13 | 22.34 | 25.14 | 43.39 |
N | 细胞运动 Cell motility | 11.51 | 27.56 | 24.76 | 36.17 |
C | 能源生产和转换 Energy production and conversion | 6.95 | 22.64 | 34.08 | 36.33 |
F | 核苷酸转运与代谢 Nucleotide transport and metabolism | 7.08 | 20.78 | 35.40 | 36.75 |
L | 复制、重组和修复 Replication, recombination and repair | 7.57 | 22.15 | 34.12 | 36.16 |
J | 翻译、核糖体结构与生物发生 Translation, ribosomal structure and biogenesis | 6.78 | 22.61 | 37.28 | 33.32 |
O | 翻译后修饰、蛋白质周转、伴侣 Posttranslational modification, protein turnover, chaperones | 6.64 | 20.33 | 39.57 | 33.46 |
S | 功能未知 Function unknown | 8.16 | 19.36 | 33.31 | 39.17 |
W | 细胞外结构 Extracellular structures | 0.00 | 9.89 | 22.46 | 67.65 |
P | 无机离子转运与代谢 Inorganic ion transport and metabolism | 8.83 | 18.98 | 31.41 | 40.77 |
E | 氨基酸转运与代谢 Amino acid transport and metabolism | 7.90 | 20.67 | 30.04 | 41.38 |
I | 脂质转运与代谢 Lipid transport and metabolism | 6.70 | 24.99 | 30.09 | 38.22 |
U | 细胞内运输、分泌和囊泡运输 Intracellular trafficking, secretion, and vesicular transport | 7.26 | 24.23 | 31.11 | 37.40 |
曹乐, 宁康. 昆虫肠道的宏基因组学: 微生物大数据的新疆界. 微生物学报, 2018, 58 (6): 964- 984. | |
Cao L , Ning K . Metagenomics of insect gut: new borders of microbial big data. Acta Microbiologica Sinica, 2018, 58 (6): 964- 984. | |
崔志军, 张彦龙, 罗朝辉, 等. 苹果小吉丁虫(Agrilus mali Matsumura)对野苹果林的危害及其评估. 干旱区研究, 2018, 35 (5): 1153- 1159. | |
Cui Z J , Zhang Y L , Luo Z H , et al. The regional damage and assessment of the buprestid Agrilus mali matsumura on wild apple forest. Arid Zone Research, 2018, 35 (5): 1153- 1159. | |
黄胜威. 2012. 暗黑鳃金龟幼虫肠道微生物分子多态性及纤维素降解菌多样性研究. 武汉: 华中农业大学. | |
Huang S W. 2012. Study on microbiota diversity and cellulolytic bacterial community in the hindgut of Holotrichia parallela larvae (Coleoptera: Scarabaeidae). Wuhan: Huazhong Agricultural University. [in Chinese] | |
李利平, 海鹰, 安尼瓦尔·买买提, 等. 新疆伊犁地区野果林的群落特征及保护. 干旱区研究, 2011, 28 (1): 60- 66. | |
Li L P , Hai Y , Anwar M , et al. Community structure and conservation of wild fruit forests in the Hi valley, Xinjiang. Arid Zone Research, 2011, 28 (1): 60- 66. | |
林海云, 车建美, 刘波, 等. 青枯雷尔氏菌致病机制及其相关基因的研究进展. 福建农业学报, 2011, 26 (5): 899- 906.
doi: 10.3969/j.issn.1008-0384.2011.05.044 |
|
Lin H Y , Che J M , Liu B , et al. Advances research in Ralsronia solanacearum Pathogenicity Mechanism and Related Genes. Fujian Journal of Agriculture Sciences, 2011, 26 (5): 899- 906.
doi: 10.3969/j.issn.1008-0384.2011.05.044 |
|
林培钧, 崔乃然. 天山野果林资源—伊犁野果林综合研究. 北京: 中国林业出版社, 2000. | |
Lin P J , Cui N R . Wild fruit foreste in Tianshan Mountains-comprehensive research on wild forests in Hi, Xinjiang, China. Beijing: China Forestry Publishing, 2000. | |
钱伯钦. 假单胞菌属的新问题. 国外医学(微生物学分册), 1986, (3): 137- 138. | |
Qian B Q . New problems of Pseudomonas. Foreign Medicine (Microbiology Section), 1986, (3): 137- 138. | |
王丹丹, 王清明. 丁香假单胞菌的分子生物学研究进展. 西北农业学报, 2017, 26 (4): 487- 496. | |
Wang D D , Wang Q M . Research advances molecular biology in Pseudomonas syringae. Acta Agriculturae Boreali-occidentalis Sinica, 2017, 26 (4): 487- 496. | |
王四宝, 曲爽. 昆虫共生菌及其在病虫害防控中的应用前景. 中国科学院院刊, 2017, 32 (8): 863- 872. | |
Wang S B , Qu S . Insect symbionts and their potential application in pest and vector-borne disease control. Bulletin of Chinese Academy of Sciences, 2017, 32 (8): 863- 872. | |
王智勇. 2013. 新疆野苹果林苹小吉丁生物防治技术研究. 北京: 中国林业科学研究院. | |
Wang Z Y. 2013. Researchs on biological control of Agrilus mali Matsumura (Coleoptera: Buprestidae) in stands of Malus sieversii in Xinjiang. Beijing China ese Academy of Forestry. [in Chinese] | |
王争艳, 王洋, 何梦婷, 等. 不同地理种群赤拟谷盗肠道细菌群落多样性分析. 应用昆虫学报, 2020, (3): 617- 622. | |
Wang Z Y , Wang Y , He M T , et al. Diversity of intestinal bacteria in different geographic populations of Tribolium castaneum (Coleoptera: Tenebrionidae). Chinese Journal of Applied Entomology, 2020, (3): 617- 622. | |
杨文, 陈瑶, 陈小均, 等. 茎点霉真菌Phoma adianticola引起的一种茶树新病害. 茶叶科学, 2016, 36 (1): 9. | |
Yang W , Chen Y , Chen X J , et al. A new disease of tea plant caused by Phoma adianticola. Journal of Tea Science, 2016, 36 (1): 9. | |
张筠, 刘宁, 孟祥晨. 德氏乳杆菌保加利亚亚种胞外多糖抗肿瘤免疫调节作用. 营养学报, 2009, 31 (3): 267- 270. | |
Zhang J , Liu N , Men X C . The antitumour and immunomodulating effect of exopolysaccharides produced by Lactobacillus delbruecckii ssp. bulgaricus. Acta Nutrimenta Sinica, 2009, 31 (3): 267- 270. | |
张静, 张博. 昆虫肠道微生物研究进展. 科技创新与应用, 2017, (5): 50. | |
Zhang J , Zhang B . Advance of insect gut microorganisms. Technology Innovation and Application, 2017, (5): 50. | |
张军毅, 朱冰川, 徐超, 等. 基于分子标记的宏基因组16S rRNA基因高变区选择策略. 应用生态学报, 2015, 26 (11): 3545- 3553. | |
Zhang J Y , Zhu B C , Xu C , et al. Strategy of selecting 16S rRNA hypervariable regions for matagenome-phylogenetic marker genes based analysis. Chinese Journal of Applied Ecology, 2015, 26 (11): 3545- 3553. | |
周忠福, 赵文霞, 林若竹, 等. 新疆野生苹果林苹小吉丁的伴生真菌多样性. 林业科学, 2020, 56 (7): 82- 90. | |
Zhou Z F , Zhao W X , Lin R Z , et al. Diversity of associated fungi of Agrilus mali (Coleoptera: Buprestidae) in wild apple forests of Xinjiang. Scientia Silvae Sinicae, 2020, 56 (7): 82- 90. | |
Blaalid R , Kumar S , Nilsson R H , et al. ITS1 versus ITS2 as DNA metabarcodes for fungi. Molecular Ecology Resources, 2013, 13 (2): 218- 224.
doi: 10.1111/1755-0998.12065 |
|
Bozorov T A , Rasulov B A , Zhang D . Characterization of the gut microbiota of invasive Agrilus mali Matsumara (Coleoptera: Buprestidae) using high-throughput sequencing: uncovering plant cell-wall degrading bacteria. Scientific Rep ovts, 2019, 9 (1): 4923.
doi: 10.1038/s41598-019-41368-x |
|
Briard B , Heddergott C , Latgé JP . Volatile compounds emitted by Pseudomonas aeruginosa stimulate growth of the fungal pathogen Aspergillus fumigatus. mBio, 2016, 7 (2): e00219. | |
Brummel T , Ching A , Seroude L , et al. Drosophila lifespan enhancement by exogenous bacteria. Proceedings of the National Academy of Sciences, 2004, 101 (35): 12974- 12979.
doi: 10.1073/pnas.0405207101 |
|
Cheng Y , Zhao W X , Lin R Z , et al. Fusarium species in declining wild apple forests on the northern slope of the Tian Shan Mountains in north-western China. Forest Pathology, 2019, 49 (5): e12542.
doi: 10.1111/efp.12542 |
|
Colman D R , Toolson E C , Takacs-Vesbach C D . Do diet and taxonomy influence insect gut bacterial communities?. Molecular Ecology, 2012, 21 (20): 5124- 5137.
doi: 10.1111/j.1365-294X.2012.05752.x |
|
Dong Y , Manfredini F , Dimopoulos G . Implication of the mosquito midgut microbiota in the defense against malaria parasites. PLoS Pathogens, 2009, 5 (5): e1000423.
doi: 10.1371/journal.ppat.1000423 |
|
Douglas A E . Multi organismal insects: diversity and function of resident microorganisms. Annual Review of Entomology, 2015, 60 (1): 17.
doi: 10.1146/annurev-ento-010814-020822 |
|
Engel P , Moran N A . The gut microbiota of insects-diversity in structure and function. FEMS Microbiol Rev, 2013, 37 (5): 699- 735.
doi: 10.1111/1574-6976.12025 |
|
Hammer T J , Bowers M D . Gut microbes may facilitate insect herbivory of chemically defended plants. Oecologia, 2015, 179 (1): 1- 14.
doi: 10.1007/s00442-015-3327-1 |
|
Hong P Y , Wheeler E , Cann I K O , et al. Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing. Isme Journal, 2011, 5 (9): 1461.
doi: 10.1038/ismej.2011.33 |
|
Hosokawa T , Kikuchi Y , Fukatsu T . How many symbionts are provided by mothers, acquired by offspring, and needed for successful vertical transmission in an obligate insect-bacterium mutualism?. Molecular Ecology, 2010, 16 (24): 5316- 5325. | |
Kikuchi Y , Hosokawa T , Fukatsu T . Insect-Microbe Mutualism without vertical transmission: a stinkbug acquires a beneficial gut symbiont from the environment every generation. Applied and Environmental Microbiology, 2007, 73 (13): 4308- 4316.
doi: 10.1128/AEM.00067-07 |
|
Olofsson T C , Vasquez A . Detection and identification of a novel lactic acid bacterial flora within the honey stomach of the honeybee Apis mellifera. Current Microbiology, 2008, 57 (4): 356- 363.
doi: 10.1007/s00284-008-9202-0 |
|
Pang X , Fu S J , Li X M , et al. The effects of starvation and re-feeding on growth and swimming performance of juvenile black carp (Mylopharyngodon piceus). Fish Physiology and Biochemistry, 2016, 42 (4): 1203- 1212.
doi: 10.1007/s10695-016-0210-x |
|
Peterson B F , Scharf M E . Lower Termite associations with microbes: synergy, protection, and interplay. Frontiers in Microbiology, 2016, 7, e6577. | |
Shukla S P , Sanders J G , Byrne M J , et al. Gut microbiotaof dung beetles correspond to dietary specializations of adults and larvae. Molecular Ecology, 2016, 25 (24): 6092- 6106.
doi: 10.1111/mec.13901 |
|
Suárez-Moo P , Cruz-Rosales M , Ibarra-Laclette E , et al. Diversity and composition of the gut microbiota in the developmental stages of the dung beetle Copris incertus Say (Coleoptera, Scarabaeidae). Frontiers in Microbiology, 2020, 11, 1698.
doi: 10.3389/fmicb.2020.01698 |
|
Tsuchida A. 2002. Gut-clamping mechanism in gut-stretching equipment for tennis rackets. US, LIS639867482. | |
Wang X , Gao Q , Wang W , et al. The gut bacteria across life stages in the synanthropic fly Chrysomya megacephala. BMC Microbiologg, 2018, 18 (1): 131.
doi: 10.1186/s12866-018-1272-y |
|
Xia X , Zheng D , Zhong H , et al. DNA sequencing reveals the midgut microbiota of Diamondback Moth, Plutella Xylostella (L.) and a possible relationship with insecticide resistance. PLoS One, 2013, 8 (7): e68852.
doi: 10.1371/journal.pone.0068852 |
|
Zhang Z Q , Jiao S , Li X , et al. Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets. Scientific Reports, 2018, 8 (1): 1- 11. |
[1] | Chen Liu,Chunyu Zhang,Xiuhai Zhao. Effects of Disturtance by Thinning on Productivity Stability of Conifer-Broadleaf Mixed Forest in Jiaohe, Jilin Province [J]. Scientia Silvae Sinicae, 2022, 58(3): 1-9. |
[2] | Cong Li,Jinghua Lu,Mei Lu,Zhidong Yang,Pan Liu,Yulian Ren,Fan Du. Distribution of Soil Microbial Biomass Carbon and Nitrogen across Different Altitudinal Vegetation Zones in Wenshan National Nature Reserve [J]. Scientia Silvae Sinicae, 2022, 58(3): 20-30. |
[3] | Jingen Peng,Jinyu Gong,Yuhai Fan,Hua Zhang,Yinfeng Zhang,Yuqing Bai,Yanmei Wang,Lijuan Xie. Diversity of Soil Microbial Communities in Rhizosphere and Non-rhizosphere of Rhododendron moulmainense [J]. Scientia Silvae Sinicae, 2022, 58(2): 89-99. |
[4] | Xuan Fang,Jingwei Wen,Yue Chen,Min Fan,Xingxia Ma. Fungal Diversity of Wooden Flume Unearthed from Nanyue National Palace Site under in situ Preservation Environment [J]. Scientia Silvae Sinicae, 2021, 57(7): 131-141. |
[5] | Chaoqun Du,Xiaomei Sun,Yunhui Xie,Yimei Hou. Genetic Diversity of Larix kaempferi Populations with Different Levels of Improvement in Northern Subtropical Region [J]. Scientia Silvae Sinicae, 2021, 57(5): 68-76. |
[6] | Xue Dong, Yonghua Li, Zhiming Xin, Ruibing Duan, bin Yao, Yanfeng Bao, Zhengguo Zhang, Yuan Liu. Patterns of Altitudinal Distribution of Species Diversity of Desert Gobi Shrub Communities in West Hexi Corridor of China [J]. Scientia Silvae Sinicae, 2021, 57(2): 168-178. |
[7] | Jinyu Gong,Jingen Peng,Lijuan Xie,Yinfeng Zhang,Chaochan Li,Yanmei Wang. Microbial Diversity in Rhizosphere Soil of Rhododendron moulmainense with Different Tree Potential in Wutong Mountain of Shenzhen [J]. Scientia Silvae Sinicae, 2021, 57(11): 190-200. |
[8] | Rongrong Pang,Jieying Peng,Yan Yan. Factors Influencing Aboveground Biomass in the Secondary Forest of Quercus aliena var. acutiserrata in Taibai Mountain [J]. Scientia Silvae Sinicae, 2021, 57(10): 157-165. |
[9] | Shengdong Liu,Jiaqi Shi,Shirui Dong,Xinyi Wu,Qingfan Meng,Yan Li,Hongrui Zhao,Yinghua Jin. Diversity of Saproxylic Beetles(Coleoptera) in Different Forest Stands of Jiaohe, Jilin Province [J]. Scientia Silvae Sinicae, 2021, 57(1): 121-130. |
[10] | Zhonghua Zhao,Gangying Hui. Advances in Structural Diversity of Stand Structure [J]. Scientia Silvae Sinicae, 2020, 56(9): 143-152. |
[11] | Xiaohong Zhao,Shanshan Chai,Manman Zhang,Yichang Fan,Yunfei Mao,Zhiquan Mao,Xiang Shen. Effects of Shell Powder on Microbial Diversity in Acidified Soil and Growth of Malus hupehensis var. mengshanensis Seedlings [J]. Scientia Silvae Sinicae, 2020, 56(9): 153-163. |
[12] | Xiaoya Pei,Nilakshi Jayasekara Arachchige Maduka,Chenhui Zhu,Dun Wang. Diversity of Entomopathogenic Fungi in Western Sichuan Plateau [J]. Scientia Silvae Sinicae, 2020, 56(8): 73-79. |
[13] | Zhongfu Zhou,Wenxia Zhao,Ruozhu Lin,Wenxia Huai,Yanxia Yao. Diversity of Associated Fungi of Agrilus mali (Coleoptera: Buprestidae) in Wild Apple Forests of Xinjiang [J]. Scientia Silvae Sinicae, 2020, 56(7): 82-90. |
[14] | Changlin Liu,Guoying Zhou,Bai Xiao,Jun Liu. Diversity of Endophytic Fungi in Heartwood and Sapwood of Dalbergia odorifera [J]. Scientia Silvae Sinicae, 2020, 56(4): 109-120. |
[15] | Jing Wang,Yusong Jin,Yongjie Huang,Huiren Li,Fangrui Liu,Xueshuang Liu,Lizhong Wang,Dandan Liu,Yinghua Lin. Long-Term Effects of Cutting on Ground-Dwelling Arthropod Community in Coniferous and Broadleaf Mixed Forests in the Daxing'anling Mountains [J]. Scientia Silvae Sinicae, 2020, 56(12): 177-186. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||