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林业科学 ›› 2022, Vol. 58 ›› Issue (1): 43-51.doi: 10.11707/j.1001-7488.20220105

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橡胶树胶乳高表达的法尼基焦磷酸合成酶的功能

邓小敏,杨署光,田维敏*   

  1. 中国热带农业科学院橡胶研究所 农业农村部橡胶树生物学与遗传资源利用重点实验室 省部共建国家重点实验室培育基地-海南省热带作物栽培生理学重点实验室 海口 571101
  • 收稿日期:2021-02-01 出版日期:2022-01-25 发布日期:2022-03-08
  • 通讯作者: 田维敏
  • 基金资助:
    国家自然科学基金青年科学基金项目(31800578);海南省自然科学基金高层次人才项目(320RC734)

Function of Farnesyl Pyrophosphate Synthases with High Abundance in Latex of Hevea brasiliensis

Xiaomin Deng,Shuguang Yang,Weimin Tian*   

  1. Key Laboratory of Biology and Genetic Resources of Rubber Tree of Ministry of Agriculture and Rural Affairs State Key Laboratory Incubation Base for Cultivation & Physiology of Tropical Crops Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences Haikou 571101
  • Received:2021-02-01 Online:2022-01-25 Published:2022-03-08
  • Contact: Weimin Tian

摘要:

目的: 天然橡胶生物合成途径是典型的植物类异戊二烯代谢途径,MVA代谢途径是天然橡胶与萜类化合物所需的五碳构成单元IPP和DMAPP生物合成的主要途径之一。由2分子IPP和1分子DMAPP聚合形成的法尼基焦磷酸是乳管细胞天然橡胶生物合成的起始前体,厘清该起始物的合成酶酶学性质不仅有助于阐明天然橡胶生物合成机制,同时也为天然橡胶遗传改良提供酶学理论基础。方法: 对橡胶树热研7-33-97基因组中同源的3个预测的法尼基焦磷酸合成酶(HbFPS1、HbFPS2、HbFPS3)进行序列特征分析,优选胶乳中高表达的2个法尼基焦磷酸合成酶基因构建原核表达载体,经蛋白纯化与MALDI TOF质谱确证,并同时进行体外酶活性检测,最终评价其对体外橡胶合成效率的影响。结果: 橡胶树基因组含有的3个预测的法尼基焦磷酸合成酶都含有特征性的2个保守结构域“DDIMD”和“DDYXD”及相似的三维空间结构,其中胶乳高表达的HbFPS1HbFPS2基因编码的蛋白氨基酸序列相似性达到95%,说明HbFPS1HbFPS2 2个冗余基因可能经历了基因组中同源基因的后期拷贝事件。同时HbFPS1HbFPS2基因能够正确地在大肠杆菌中表达,HbFPS3却难以正确折叠而形成包涵体,体现了这2类蛋白质N末端氨基酸明显的亲疏水性差异对蛋白可溶表达的影响。HbFPS1和HbFPS2蛋白在体外除了能够利用GPP为底物合成FPP外,还能够直接转化IPP和DMAPP生成FPP。同时,分别添加HbFPS1和HbFPS2蛋白能够提高体外橡胶合成效率并且存在蛋白剂量相关性特征。与对照相比,在特定的反应体系中,当HbFPS1和HbFPS2蛋白添加量增加时体外橡胶合成效率随之不同程度地提高,且在100 μg时促进作用最明显。结论: 橡胶树胶乳中高表达的2个冗余基因HbFPS1HbFPS2HbFPS3 基因编码蛋白的序列差异可能影响酶的活性。HbFPS1和HbFPS2蛋白确证是胶乳中能够促进天然橡胶合成的功能酶,而且能够直接聚合IPP和DMAPP生成天然橡胶合成起始物FPP。本研究建立了基于天然橡胶粒子的体外蛋白功能研究平台,并证明HbFPS1和HbFPS2酶在一定的含量下能够显著地提升橡胶合成效率。通过调控HbFPS1和HbFPS2酶活性将有助于橡胶树优质高产品种的改良与选育。

关键词: 橡胶树, 法尼基焦磷酸合成酶, 天然橡胶生物合成, 胶乳

Abstract:

Objective: Natural rubber biosynthesis is the typical plant isoprenoid metabolic pathway. The MVA is one of the major metabolic pathways for providing the 5-carbon component units for the subsequent natural rubber or terpenoids biosynthesis. The farnesyl pyrophosphate, forming by the polymerization of two IPP molecules with one DMAPP molecule, is identified as the primer of rubber synthesis in nature. To characterize the farnesyl pyrophosphate synthases (FPS) in rubber-producing plants is of great assistance not only in illustrating the rubber biosynthesis mechanism, but also in providing a solid enzymatic foundation for natural rubber genetic breeding. Method: Homologues analysis was applied to investigate the primary amino acids and the secondary structure between these rubber-producing plants including rubber trees (Hevea brasiliensis). The two highly homologous FPS-encoding genes with high expression were selected to construct prokaryotic expressed vectors. The two rubber tree FPS genes expressed their recombinant products were purified and further confirmed by MALDI TOF mass spectrometry detection. After the in vitro enzymatic reaction assay, these two FPS proteins were supplemented to the in vitro rubber synthesis efficacy analysis. Result: Rubber tree harbored three predicted homologous FPS proteins with two conserved motifs 'DDIMD' and 'DDYXD' and similar tertiary structures. The amino acids similarity of the homologous proteins encoded by the two highly-expressed FPS genes was reached 95%, indicating the later gene copy events during its genome evolution. HbFPS1 and HbFPS2 genes can be correctly expressed in Escherichia coli, while the HbFPS 3 existed mostly in the inclusion body, reflecting the probable affection by the obvious difference of hydrophilicity or hydrophobicity in their N-terminal amino acids. The HbFPS1 and HbFPS2 proteins exhibited direct FPP synthesis capacity by using the precursor IPP and DMAPP despite the theoretical precursor GPP in the in vitro enzymatic reaction. Meanwhile, the addition of HbFPS1 or HbFPS2 also respectively increased the in vitro rubber synthesis efficacy in a dose-related manner by using the native rubber particles in the reaction system, and peak improvement was observed at 100 μg level. Conclusion: The amino acids differentiation may affect the catalytic activity between the two highly homologues redundant HbFPS1 and HbFPS2 proteins with the HbFPS3. HbFPS1 and HbFPS2 are indeed the exact functional enzymes that participate in the natural rubber biosynthesis process, especially harboring the ability to generate FPP by direct polyreaction of IPP and DMAPP per se. We establish an in vitro protein functional analysis platform via the natural rubber particles, and confirm the significant enhancement in the natural rubber synthesis efficacy by HbFPS1 and HbFPS2 enzymes when supplemented at an appropriate level. Fine-tuning the rubber tree HbFPS1 and HbFPS2 enzymatic activities will be conducive to the genetic improvement and breeding of novel rubber tree varieties with high quality and high yield.

Key words: Hevea brasiliensis, farnesyl pyrophosphate synthase, natural rubber biosynthesis, latex

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