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林业科学 ›› 2021, Vol. 57 ›› Issue (7): 70-79.doi: 10.11707/j.1001-7488.20210708

• 论文与研究报告 • 上一篇    下一篇

毛竹铵态氮转运蛋白的分子特征及基因表达模式

李真1,袁婷婷1,朱成磊1,杨克彬1,宋新章2,高志民1,*   

  1. 1. 国际竹藤中心竹藤资源基因科学与基因产业化研究所 国家林业和草原局/北京市共建竹藤科学与技术重点实验室 北京 100102
    2. 浙江农林大学 杭州 311300
  • 收稿日期:2020-08-20 出版日期:2021-07-25 发布日期:2021-09-02
  • 通讯作者: 高志民
  • 基金资助:
    国家自然科学基金项目(31930075);国家自然科学基金项目(31971736)

Molecular Characteristics and Patterns of Gene Expression of Ammonium Transporter in Moso Bamboo

Zhen Li1,Tingting Yuan1,Chenglei Zhu1,Kebin Yang1,Xinzhang Song2,Zhimin Gao1,*   

  1. 1. Institute of Gene Science and Industrialization for Bamboo and Rattan Resources, International Center for Bamboo and Rattan Key Laboratory of National Forestry and Grassland Administration/Beijing for Bamboo & Rattan Science and Technology Beijing 100102
    2. Zhejiang A & F University Hangzhou 311300
  • Received:2020-08-20 Online:2021-07-25 Published:2021-09-02
  • Contact: Zhimin Gao

摘要:

目的: 氮素是植物生长发育必需的大量元素,铵态氮是根系可利用的主要氮源形式之一,铵态氮转运蛋白(AMT)在铵态氮的获取和运输中发挥着重要作用。速生是毛竹最主要的特点,鉴定其中的AMT基因,并对其结构和表达模式进行系统分析,为深入研究毛竹AMT家族基因在快速生长和环境适应性中的功能奠定基础。方法: 采用生物信息学方法鉴定毛竹AMT家族基因成员,对其系统发育、结构特征、组织表达特异性以及对激素和非生物胁迫应答进行分析,通过qPCR方法验证关键基因在干旱处理下的表达模式。结果: 在毛竹基因组中共鉴定出13个AMT家族基因,命名为PeAMT1-PeAMT13,其编码蛋白长度为408~497个氨基酸,亚细胞定位预测显示所有PeAMTs均定位于质膜上。系统发育分析表明,PeAMTs分为2个亚家族,不同亚家族之间具有各自的特异基序,但全部PeAMTs的Motif 2都包含了铵转运蛋白的典型保守序列。共线性分析结果表明,有8对PeAMTs存在共线性,而且11个PeAMTs与8个OsAMTs存在共线性,在进化过程中PeAMTs经历了纯化选择。PeAMTs具有组织表达特异性,多数在毛竹根部和叶片的表达水平最高,其次是发育初期的笋,在发育后期木质化程度较高的笋中表达水平较低。PeAMTs启动子中包含多种激素和非生物胁迫应答元件,GA3、油菜素内酯(BL)和干旱处理能引起多数PeAMTs表达量的显著变化,NAA和低温处理也能引起6个PeAMTs表达量的显著变化。筛选关键基因PeAMT1PeAMT2PeAMT3进行干旱处理下的qPCR验证,结果表明三者的表达变化均达到显著水平。结论: 毛竹中具有13个编码完整AMT的基因(PeAMTs),它们在结构特点和组织表达特异性方面均存在一定的差异,其表达受到激素和非生物胁迫的影响。PeAMTs可能通过在根部高表达协助毛竹从土壤中获取铵盐,在叶片中高表达对铵盐进行转移和回收,保证毛竹快速生长过程中充足的氮供应;同时可能在提高毛竹抗逆性中发挥铵解毒的功能。

关键词: 毛竹, 铵态氮转运蛋白, 分子特征, 基因表达

Abstract:

Objective: Nitrogen is one of macroelements necessary for plant growth and development,and ammonium nitrogen is one of the main nitrogen sources available for roots. Ammonium transporter(AMT) plays an important role in the acquisition and transport of ammonium nitrogen. Fast growth is the most important feature of Moso bamboo(Phyllostachys edulis). The identification of AMT genes in Moso bamboo,and the systematic analysis of their structures and expression patterns will lay the foundation for in-depth study on the function of AMT genes in rapid growth of Moso bamboo and its environmental adaptability. Method: Bioinformatics methods were used to identify the gene members of AMT family in Moso bamboo. Furthermore,their phylogeny,structural characteristics,tissue expression specificity,and responses to hormones and abiotic stresses were analyzed,and the expression patterns of key genes under drought treatment were verified by qPCR. Result: A total of 13 AMT family genes were identified in the genome of Moso bamboo,named PeAMT1-PeAMT13. The proteins encoded by PeAMTs were 408-497 amino acids in length,and the subcellular localization prediction showed that all PeAMTs were located on the plasma membrane. Phylogenetic analysis showed that PeAMTs were divided into two subfamilies,and each of which had its own specific motifs,but all PeAMTs contained the typical conserved sequence in Motif 2 of ammonium transporters. The collinearity analysis showed that eight pairs of PeAMTs had collinearity,and 11 PeAMTs had collinearity with eight OsAMTs. PeAMTs were subjected to purification selection. PeAMTs had tissue expression specificity,most of which had the highest expression level in roots and leaves,followed by shoots at early stage of growth,and lower expression levels in shoots with higher lignification at late stage of growth. A variety of hormones and abiotic stress response elements were found in the promoter of PeAMTs. The treatments of GA3,brassinolide(BL) and drought all caused significant changes in the expression of most PeAMTs,and NAA and low temperature treatments also resulted in significant expression changes of six PeAMTs(P < 0.05). The key genes PeAMT1,PeAMT2,and PeAMT3 were screened for qPCR verification under drought treatment,and the expression changes of the three genes reached significant levels(P < 0.05). Conclusion: There were 13 PeAMTs encoding complete AMT in Moso bamboo,which had certain differences in structural characteristics and tissue expression specificity,and their expression was affected by hormones and abiotic stresses. PeAMTs might help Moso bamboo to obtain ammonium nitrogen from the soil by a high expression in the roots,and transfer and recycle ammonium nitrogen in the leaves with a high expression to ensure sufficient nitrogen supply during the rapid growth of Moso bamboo. Meanwhile,PeAMTs might function in ammonium detoxification for improving the resistance of Moso bamboo.

Key words: Phyllostachys edulis, ammonium transporter, molecular characteristics, gene expression

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