Scientia Silvae Sinicae ›› 2021, Vol. 57 ›› Issue (5): 53-67.doi: 10.11707/j.1001-7488.20210506
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Xue Yuan1,*,Tao Yuan1,Shaodan Liu2
Received:
2020-06-18
Online:
2021-07-25
Published:
2021-07-09
Contact:
Xue Yuan
CLC Number:
Xue Yuan,Tao Yuan,Shaodan Liu. Variation in Physiological and Biochemical Properties and DNA Methylation Patterns during Autumn Flowering of Tree Peony(Paeonia Suffruticosa)[J]. Scientia Silvae Sinicae, 2021, 57(5): 53-67.
Table 1
The schedule of experimental treatment and sampling"
处理 Treatment | 日期Date(天数) | ||||||||||
09 -16 (0 d) | 09-17 (1 d) | 09-19 (3 d) | 09-20 (4 d) | 09-21 (5 d) | 09-22 (6 d) | 09-27 (11 d) | 10-03 (17 d) | 10-10 (24 d) | 10-18 (32 d) | 10-28 (42 d) | |
对照 Control | — | √ | √ | — | — | √ | √ | √ | √ | √ | √ |
处理A Treatment A | 脱叶 Defoliation | √ | √ | — | — | √ | √ | √ | √ | √ | √ |
处理B Treatment B | 脱叶 Defoliation | √ | GA3 √ | GA3 | GA3 | √ | √ | √ | √ | √ | √ |
处理C Treatment C | 脱叶 Defoliation | √ | PP333 √ | PP333 | PP333 | √ | √ | √ | √ | √ | √ |
Table 2
MSAP adapters sequences and pre-amplification primer sequences"
引物类型Primer type | 引物名称Primer name | 引物序列Primer sequence(5′—3′) |
接头Adapter | EcoRⅠ-adaptor top | CTCGTAGACTGCGTACC |
EcoRⅠ-adaptor bottom | AATTGGTACGCAGTCTAC | |
HpaⅡ-MspⅠadaptor top | GATCTGAGTCCTGCT | |
HpaⅡ-MspⅠadaptor bottom | CGAGCAGGACTCATGA | |
预扩增引物 Pre-amplification primers | EcoRⅠ-0 | GACTGCGTACCAATT |
HpaⅡ-MspⅠ-0 | ATCATGAGTCCTGCTCGG |
Table 3
MSAP selective amplification primer sequences"
组合名称 Combination name | 引物组合 Primer combination |
MSAP18 | EcoRⅠ-AT+HpaⅡ-MspⅠ-TTC |
MSAP21 | EcoRⅠ-AC+HpaⅡ-MspⅠ-AAT |
MSAP22 | EcoRⅠ-AC+HpaⅡ-MspⅠ-AAC |
MSAP23 | EcoRⅠ-AC+HpaⅡ-MspⅠ-AAG |
MSAP25 | EcoRⅠ-AC+HpaⅡ-MspⅠ-ACG |
MSAP26 | EcoRⅠ-TA+HpaⅡ-MspⅠ-AAT |
MSAP27 | EcoRⅠ-TA+HpaⅡ-MspⅠ-AAC |
MSAP28 | EcoRⅠ-TA+HpaⅡ-MspⅠ-AAG |
MSAP29 | EcoRⅠ-TA+HpaⅡ-MspⅠ-ACC |
MSAP30 | EcoRⅠ-TA+HpaⅡ-MspⅠ-ACG |
Fig.3
Different developmental states of P. suffruticosa 'Togawakan' flower buds on the same plants at the same time In the control group, flower buds in different developmental states appeared in one plant. No. 0-3 were dormant buds, which flowered in spring in 2020. The buds of No. 4-9 have begun to burst and flower successively in November 2019. All figures were taken on Nov. 5, 2019 in the Luoyang International Peony Garden."
Fig.5
The effect of different treatments on sprouting The petiole in the figure shows the retained leaves. On September 16, treatment A, B and C were defoliated for the whole plant (the photos were taken before defoliation on the same day). Therefore, after September 16, leaves were left only in the control; after October 10, the plant naturally defoliated, no more leaves were left. Treatment B burst from September 27, treatment A burst from October 3, treatment C burst from October 10, and the control did not burst until November 7. Flowers gradually developed after bursting in each group."
Table 4
The effects of different treatments on DNA methylation patterns detected by MSAP"
采样日期 Sampling date | 对照 Control | 处理A Treatment A | 处理B Treatment B | 处理C Treatment C |
半甲基化位点数(比例) Hemi-methylation loci(rate) | ||||
09-17 | 119(5.1%) | 403(17.3%) | 403(17.4%) | 403(17.5%) |
09-19 | 154(6.6%) | 253(10.9%) | 253(10.1%) | 253(10.11%) |
09-22 | 158(6.8%) | 262(11.2%) | 248(10.6%) | 260(11.2%) |
09-27 | 169(7.3%) | 278(11.9%) | 219(9.4%) | 304(13.0%) |
10-03 | 163(7.0%) | 292(12.5%) | 307(13.2%) | 216(9.3%) |
10-10 | 182(7.8%) | 297(12.7%) | 272(11.7%) | 319(13.7%) |
10-18 | 215(9.2%) | 208(8.9%) | 256(11.0%) | 268(11.5%) |
10-28 | 207(8.9%) | 418(17.9%) | 306(13.1%) | 327(14.0%) |
完全甲基化位点数(比例) Fully methylation loci(rate) | ||||
09-17 | 1 215(52.1%) | 959(41.2%) | 959(41.3%) | 959(41.4%) |
09-19 | 1 235(53.0%) | 1 136(48.8%) | 1 136(48.9%) | 1 136(48.1%) |
09-22 | 1 404(60.3%) | 1 323(56.8%) | 1 334(57.3%) | 1 304(56.0%) |
09-27 | 1 306(56.1%) | 1 341(57.6%) | 1 441(61.8%) | 1 280(54.9%) |
10-03 | 1 419(60.9%) | 1 387(59.5%) | 1 293(55.5%) | 1 472(63.2%) |
10-10 | 1 367(58.7%) | 1 321(56.7%) | 1 378(59.1%) | 1 337(57.4%) |
10-18 | 1 271(54.5%) | 1 351(58.0%) | 1 298(55.7%) | 1 092(46.9%) |
10-28 | 1 262(54.2%) | 1 010(43.3%) | 1 186(50.9%) | 1 267(54.4%) |
总甲基化位点数(比例) Total methylation loci(rate) | ||||
09-17 | 1 334(57.3%) | 1 362(58.5%) | 1 362(58.6%) | 1 362(58.7%) |
09-19 | 1 389(59.6%) | 1 389(59.6%) | 1 389(59.7%) | 1 389(59.8%) |
09-22 | 1 562(67.0%) | 1 585(68.0%) | 1 582(67.9%) | 1 564(67.1%) |
09-27 | 1 475(63.3%) | 1 619(69.5%) | 1 660(71.2%) | 1 584(68.0%) |
10-03 | 1 582(67.9%) | 1 679(72.1%) | 1 600(68.7%) | 1 688(72.4%) |
10-10 | 1 549(66.5%) | 1 618(69.4%) | 1 650(70.8%) | 1 656(71.1%) |
10-18 | 1 486(63.8%) | 1 559(66.9%) | 1 554(66.7%) | 1 360(58.4%) |
10 -28 | 1 469(63.0%) | 1 428(61.3%) | 1 492(64.0%) | 1 594(68.4%) |
Table 5
DNA methylation patterns of control at different time"
甲基化模式Methylation patterns | 位点数(比例) Loci(rate) | ||||||||||
带型 Banding patterns | 对照 Control (1 d) | 对照 Control | 3 d | 6 d | 11 d | 17 d | 24 d | 32 d | 42 d | ||
A | 不变Same methylation level | 1 640 (70.4%) | 1 445 (62.0%) | 1 569 (67.3%) | 1 440 (61.8%) | 1 491 (64.0%) | 1 488 (63.9%) | 1 456 (62.5%) | |||
A1 | 1, 1 | 1, 1 | 751 | 614 | 688 | 597 | 631 | 664 | 651 | ||
A2 | 1, 0 | 1, 0 | 27 | 30 | 31 | 26 | 29 | 32 | 35 | ||
A3 | 0, 1 | 0, 1 | 26 | 49 | 42 | 58 | 53 | 37 | 45 | ||
A4 | 0, 0 | 0, 0 | 836 | 752 | 808 | 759 | 778 | 755 | 725 | ||
B | 去甲基化 Demethylation | 275 (11.8%) | 342 (14.7%) | 317 (13.6%) | 348 (14.9%) | 335 (14.4%) | 373 (16.0%) | 410 (17.6%) | |||
B1 | 1, 0 | 1, 1 | 31 | 21 | 33 | 27 | 29 | 34 | 35 | ||
B2 | 0, 1 | 1, 1 | 53 | 46 | 65 | 53 | 57 | 67 | 73 | ||
B3 | 0, 0 | 1, 1 | 106 | 87 | 69 | 71 | 64 | 79 | 102 | ||
B4 | 0, 0 | 1, 0 | 51 | 70 | 70 | 74 | 87 | 91 | 94 | ||
B5 | 0, 0 | 0, 1 | 34 | 118 | 80 | 123 | 98 | 102 | 106 | ||
C | 超甲基化 Hypermethylation | 383 (16.4%) | 509 (21.8%) | 411 (17.6%) | 508 (21.8%) | 473 (20.3%) | 439 (18.8%) | 435 (18.7%) | |||
C1 | 1, 1 | 1, 0 | 53 | 45 | 53 | 52 | 52 | 74 | 62 | ||
C2 | 1, 1 | 0, 1 | 57 | 142 | 82 | 143 | 128 | 90 | 94 | ||
C3 | 1, 1 | 0, 0 | 135 | 195 | 173 | 204 | 185 | 168 | 189 | ||
C4 | 0, 1 | 0, 0 | 86 | 80 | 66 | 66 | 64 | 66 | 54 | ||
C5 | 1, 0 | 0, 0 | 52 | 47 | 37 | 43 | 44 | 41 | 36 | ||
D | 不定型Methylation pattern changed | 32 (1.4%) | 34 (1.5%) | 33 (1.4%) | 34 (1.5%) | 31 (1.3%) | 30 (1.3%) | 29 (1.2%) | |||
D1 | 0, 1 | 1, 0 | 23 | 13 | 15 | 11 | 14 | 18 | 16 | ||
D2 | 1, 0 | 0, 1 | 9 | 21 | 18 | 23 | 17 | 12 | 13 | ||
合计Total | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) |
Table 6
Difference of DNA methylation patterns between control and treatment A"
甲基化模式Methylation patterns | 位点数(比例) Loci(rate) | ||||||||||
带型 Banding patterns | 对照 Control (1 d) | 处理A Treatment A | 1 d | 3 d | 6 d | 11 d | 17 d | 24 d | 32 d | 42 d | |
A | 不变Same methylation level | 1 386 (59.5%) | 1 476 (63.3%) | 1 306 (56.1%) | 1 251 (53.7%) | 1 209 (51.9%) | 1 253 (53.8%) | 1 304 (56.0%) | 1 179 (50.6%) | ||
A1 | 1, 1 | 1, 1 | 710 | 712 | 582 | 537 | 507 | 548 | 572 | 600 | |
A2 | 1, 0 | 1, 0 | 35 | 38 | 29 | 30 | 31 | 38 | 29 | 37 | |
A3 | 0, 1 | 0, 1 | 21 | 37 | 37 | 57 | 44 | 60 | 39 | 29 | |
A4 | 0, 0 | 0, 0 | 620 | 689 | 658 | 627 | 627 | 607 | 664 | 513 | |
B | 去甲基化 Demethylation | 527 (22.6%) | 454 (19.5%) | 440 (18.9%) | 471 (20.2%) | 468 (20.1%) | 489 (21.0%) | 451 (19.4%) | 626 (26.9%) | ||
B1 | 1, 0 | 1, 1 | 42 | 40 | 25 | 28 | 24 | 21 | 30 | 38 | |
B2 | 0, 1 | 1, 1 | 78 | 76 | 46 | 43 | 44 | 48 | 58 | 74 | |
B3 | 0, 0 | 1, 1 | 138 | 113 | 92 | 103 | 76 | 95 | 111 | 190 | |
B4 | 0, 0 | 1, 0 | 212 | 119 | 147 | 131 | 158 | 145 | 95 | 211 | |
B5 | 0, 0 | 0, 1 | 57 | 106 | 130 | 166 | 166 | 180 | 157 | 113 | |
C | 超甲基化 Hypermethylation | 368 (15.8%) | 366 (15.7%) | 537 (23.0%) | 553 (23.7%) | 608 (26.1%) | 541 (23.2%) | 538 (23.1%) | 468 (20.1%) | ||
C1 | 1, 1 | 1, 0 | 116 | 76 | 65 | 89 | 81 | 93 | 70 | 127 | |
C2 | 1, 1 | 0, 1 | 66 | 92 | 148 | 199 | 162 | 185 | 120 | 110 | |
C3 | 1, 1 | 0, 0 | 104 | 116 | 201 | 171 | 246 | 170 | 234 | 159 | |
C4 | 1, 0 | 0, 0 | 33 | 27 | 39 | 34 | 41 | 34 | 37 | 30 | |
C5 | 0, 1 | 0, 0 | 49 | 55 | 84 | 60 | 78 | 59 | 77 | 42 | |
D | 不定型Methylation pattern changed | 49 (2.1%) | 34 (1.5%) | 47 (2.0%) | 55 (2.4%) | 45 (1.9%) | 47 (2.0%) | 37 (1.6%) | 57 (2.4%) | ||
D1 | 0, 1 | 1, 0 | 40 | 20 | 21 | 28 | 22 | 21 | 14 | 43 | |
D2 | 1, 0 | 0, 1 | 9 | 14 | 26 | 27 | 23 | 26 | 23 | 14 | |
合计Total | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) |
Table 7
Difference of DNA methylation patterns between control and treatment B"
甲基化模式Methylation patterns | 位点数(比例)Loci(rate) | ||||||||||
带型 Banding patterns | 对照 Control (1 d) | 处理B Treatment B | 1 d | 3 d | 6 d | 11 d | 17 d | 24 d | 32 d | 42 d | |
A | 不变Same methylation level | 1 386 (59.5%) | 1 476 (63.3%) | 1 254 (53.8%) | 1 256 (53.9%) | 1 260 (54.1%) | 1 266 (54.3%) | 1 284 (55.1%) | 1 313 (56.4%) | ||
A1 | 1, 1 | 1, 1 | 710 | 712 | 557 | 525 | 549 | 528 | 578 | 614 | |
A2 | 1, 0 | 1, 0 | 35 | 38 | 26 | 29 | 31 | 28 | 34 | 34 | |
A3 | 0, 1 | 0, 1 | 21 | 37 | 43 | 49 | 35 | 42 | 37 | 42 | |
A4 | 0, 0 | 0, 0 | 620 | 689 | 628 | 653 | 645 | 668 | 635 | 623 | |
B | 去甲基化 Demethylation | 527 (22.6%) | 454 (19.5%) | 485 (20.8%) | 439 (18.8%) | 467 (20.0%) | 433 (18.6%) | 485 (20.8%) | 501 (21.5%) | ||
B1 | 1, 0 | 1, 1 | 42 | 40 | 32 | 23 | 30 | 26 | 32 | 33 | |
B2 | 0, 1 | 1, 1 | 78 | 76 | 54 | 42 | 55 | 48 | 61 | 64 | |
B3 | 0, 0 | 1, 1 | 138 | 113 | 105 | 80 | 96 | 78 | 105 | 127 | |
B4 | 0, 0 | 1, 0 | 212 | 119 | 139 | 122 | 156 | 136 | 125 | 152 | |
B5 | 0, 0 | 0, 1 | 57 | 106 | 155 | 172 | 130 | 145 | 162 | 125 | |
C | 超甲基化 Hypermethylation | 368 (15.8%) | 366 (15.7%) | 548 (23.5%) | 591 (25.4%) | 557 (23.9%) | 595 (25.5%) | 523 (22.4%) | 474 (20.3%) | ||
C1 | 1, 1 | 1, 0 | 116 | 76 | 60 | 51 | 90 | 91 | 77 | 98 | |
C2 | 1, 1 | 0, 1 | 66 | 92 | 173 | 192 | 126 | 139 | 131 | 152 | |
C3 | 1, 1 | 0, 0 | 104 | 116 | 206 | 228 | 231 | 238 | 210 | 132 | |
C4 | 1, 0 | 0, 0 | 33 | 27 | 41 | 40 | 42 | 46 | 35 | 32 | |
C5 | 0, 1 | 0, 0 | 49 | 55 | 68 | 80 | 68 | 81 | 70 | 60 | |
D | 不定型Methylation pattern changed | 49 (2.1%) | 34 (1.5%) | 43 (1.8%) | 44 (1.9%) | 46 (2.0%) | 36 (1.5%) | 38 (1.6%) | 42 (1.8%) | ||
D1 | 0, 1 | 1, 0 | 40 | 20 | 23 | 17 | 30 | 17 | 20 | 22 | |
D2 | 1, 0 | 0, 1 | 9 | 14 | 20 | 27 | 16 | 19 | 18 | 20 | |
合计Total | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) |
Table 8
Difference of DNA methylation patterns between control and treatment C"
甲基化模式Methylation patterns | 位点数(比例) Loci(rate) | ||||||||||
带型 Banding patterns | 对照 Control (1 d) | 处理C Treatment C | 1 d | 3 d | 6 d | 11 d | 17 d | 24 d | 32 d | 42 d | |
A | 不变 Same methylation level | 1 386 (59.5%) | 1 476 (63.3%) | 1 277 (54.8%) | 1 234 (53.0%) | 1 229 (52.7%) | 1 210 (51.9%) | 1 383 (59.4%) | 1 331 (57.1%) | ||
A1 | 1, 1 | 1, 1 | 710 | 712 | 581 | 636 | 491 | 517 | 696 | 579 | |
A2 | 1, 0 | 1, 0 | 35 | 38 | 32 | 21 | 29 | 32 | 29 | 43 | |
A3 | 0, 1 | 0, 1 | 21 | 37 | 35 | 28 | 54 | 40 | 48 | 38 | |
A4 | 0, 0 | 0, 0 | 620 | 689 | 629 | 549 | 655 | 621 | 610 | 671 | |
B | 去甲基化 Demethylation | 527 (22.6%) | 454 (19.5%) | 481 (20.6%) | 605 (26.0%) | 445 (19.1%) | 476 (20.4%) | 534 (22.9%) | 428 (18.4%) | ||
B1 | 1, 0 | 1, 1 | 42 | 40 | 30 | 39 | 25 | 24 | 48 | 26 | |
B2 | 0, 1 | 1, 1 | 78 | 76 | 53 | 88 | 48 | 46 | 69 | 46 | |
B3 | 0, 0 | 1, 1 | 138 | 113 | 102 | 212 | 78 | 87 | 157 | 85 | |
B4 | 0, 0 | 1, 0 | 212 | 119 | 141 | 127 | 116 | 164 | 143 | 133 | |
B5 | 0, 0 | 0, 1 | 57 | 106 | 155 | 139 | 178 | 155 | 117 | 138 | |
C | 超甲基化 Hypermethylation | 368 (15.8%) | 366 (15.7%) | 529 (22.7%) | 448 (19.2%) | 610 (26.2%) | 595 (25.5%) | 372 (16.0%) | 514 (22.1%) | ||
C1 | 1, 1 | 1, 0 | 116 | 76 | 64 | 61 | 59 | 97 | 71 | 110 | |
C2 | 1, 1 | 0, 1 | 66 | 92 | 143 | 125 | 240 | 144 | 102 | 112 | |
C3 | 1, 1 | 0, 0 | 104 | 116 | 208 | 174 | 206 | 238 | 127 | 195 | |
C4 | 1, 0 | 0, 0 | 33 | 27 | 37 | 34 | 31 | 40 | 26 | 34 | |
C5 | 0, 1 | 0, 0 | 49 | 55 | 77 | 54 | 74 | 76 | 46 | 63 | |
D | 不定型Methylation pattern changed | 49 (2.1%) | 34 (1.5%) | 43 (1.8%) | 43 (1.8%) | 46 (2.0%) | 49 (2.1%) | 41 (1.8%) | 57 (2.4%) | ||
D1 | 0, 1 | 1, 0 | 40 | 20 | 23 | 18 | 12 | 26 | 25 | 41 | |
D2 | 1, 0 | 0, 1 | 9 | 14 | 20 | 25 | 34 | 23 | 16 | 16 | |
合计Total | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) | 2 330 (100.0%) |
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