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林业科学 ›› 2009, Vol. 12 ›› Issue (12): 30-35.doi: 10.11707/j.1001-7488.20091205

• 论文 • 上一篇    下一篇

mRNA差异显示法研究杉木木材形成相关cDNA*

香香 杨立伟 施季森 王桂风   

  1. 南京林业大学森林资源与环境学院 南京210037
  • 收稿日期:2008-08-28 修回日期:1900-01-01 出版日期:2009-12-25 发布日期:2009-12-25
  • 基金资助:
     

Isolation cDNA Related to Wood Forming in Chinese Fir (Cunninghamia lanceolata) by mRNA Differential Display

Fu Xiangxiang,Yngi Shi Jisen,ang Guifeng   

  1. College of Forest Resources and Environment, Nanjing Forestry University Nanjing 210037
  • Received:2008-08-28 Revised:1900-01-01 Online:2009-12-25 Published:2009-12-25
  • Supported by:
     

摘要:

利用差异显示法(DDRT-PCR)研究杉木的2个自然变异类型(句容0号及独干杉)木材形成过程中基因表达差异。通过银染后切割回收54个差异条带,经2次扩增和纯化、克隆转化及反向Northern杂交验证后共获得29个阳性克隆。测序后进行比对分析,结果表明: 1)Blastn比对(分值>60)有9个cDNA克隆在GeneBank中找到了相似的功能,分别与核糖体蛋白基因、信号传导功能、泛素蛋白基因、抗性功能、组氨酸磷酸转移蛋白、细胞发生功能及能量代谢相关; 2)Blastx比对有12个序列可进行功能推测; 3)还有8个cDNA在数据库中未发现匹配信息。这些信息可为杉木木材形成相关基因的分离和克隆提供研究基础。

关键词: 杉木, mRNA差异显示, 反向Northern杂交, cDNA克隆

Abstract:

Differentially displayed genes derived from the bark of two natural mutants (Cunninghamia lanceolata var. dugan and Cunninghamia lanceolata var. jurong 0)were analyzed during the wood formation by using mRNA differential display reverse transcriptase polymerase chain reaction (DDRT-PCR). Fifty-four differential display bands were collected after silver stain, and among them 29 bands were positive screening with second amplification and purification, cloning and reverse Northern blot analysis. Positive clones were sequenced and blast, the results showed: 1) nine differentially displayed transcrips matched to sequences of known or unknown function in GeneBank by Blastn (score>60). Functions of this cDNA involve ribosomal protein, signal transferring, polyubiquitin, resistant protein, histidine-containing phosphotransfer protein and ATP synthase respectively. 2) Blastx analysis showed that 12 differentially displayed fragments were able to be used for inferring functions. 3) there were still eight fragments with no hit in the GenBank. The results provided basic information for genes cloning in relation to wood forming in Chinese Fir.

Key words: Cunninghamia lanceolata, differential display reverse transcriptase polymerase chain reaction, reverse Northern blot, cDNA clone

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